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1

Towards a Phenotypic Semantic Web

Gkoutos, Georgios

Journal:

Current Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 142 KB

english, 2006

2

Allergic Diseases and Long Term Risk of Autoimmune Disorders: longitudinal cohort study and cluster analysis

Krishna, Mamidipudi Thirumala, Subramanian, Anuradhaa, Adderley, Nicola J., Zemedikun, Dawit, Gkoutos, Georgios V., Nirantharakumar, Krishnarajah

Journal:

European Respiratory Journal

Année:

2019

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2019

3

MouseFinder: Candidate disease genes from mouse phenotype data

Chao-Kung Chen, Christopher J. Mungall, Georgios V. Gkoutos, Sandra C. Doelken, Sebastian Köhler, Barbara J. Ruef, Cynthia Smith, Monte Westerfield, Peter N. Robinson, Suzanna E. Lewis, Paul N. Schofi

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 517 KB

english, 2012

4

Improving ontologies by automatic reasoning and evaluation of logical definitions

Sebastian Köhler, Sebastian Bauer, Chris J Mungall, Gabriele Carletti, Cynthia L Smith, Paul Schofield, Georgios V Gkoutos, Peter N Robinson

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 298 KB

english, 2011

5

Integrating systems biology models and biomedical ontologies

Robert Hoehndorf, Michel Dumontier, John H Gennari, Sarala Wimalaratne, Bernard de Bono, Daniel L Cook, Georgios V Gkoutos

Journal:

BMC Systems Biology

Année:

2011

Langue:

english

Fichier:

PDF, 399 KB

english, 2011

6

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease

John M. Hancock, Ann-Marie Mallon, Tim Beck, Georgios V. Gkoutos, Chris Mungall, Paul N. Schofield

Journal:

Mammalian Genome

Année:

2009

Langue:

english

Fichier:

PDF, 140 KB

english, 2009

7

Mouse genetic and phenotypic resources for human genetics

Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 352 KB

english, 2012

8

Phenotype ontologies: the bridge between genomics and evolution

Paula M. Mabee, Michael Ashburner, Quentin Cronk, Georgios V. Gkoutos, Melissa Haendel, Erik Segerdell, Chris Mungall, Monte Westerfield

Journal:

Trends in Ecology & Evolution

Année:

2007

Langue:

english

Fichier:

PDF, 441 KB

english, 2007

9

Uberon, an integrative multi-species anatomy ontology

Christopher J Mungall, Carlo Torniai, Georgios V Gkoutos, Suzanna E Lewis, Melissa A Haendel

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 697 KB

english, 2012

10

Computational tools for comparative phenomics: the role and promise of ontologies

Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Journal:

Mammalian Genome

Année:

2012

Langue:

english

Fichier:

PDF, 332 KB

english, 2012

11

[International Review of Neurobiology] Bioinformatics of Behavior: Part 1 Volume 103 || The Neurobehavior Ontology

Gkoutos, Georgios V.

Année:

2012

Langue:

english

Fichier:

PDF, 223 KB

english, 2012

12

Integrating phenotype ontologies across multiple species

Christopher J Mungall, Georgios V Gkoutos, Cynthia L Smith…

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 777 KB

english, 2010

13

Using ontologies to describe mouse phenotypes

Georgios V Gkoutos, Eain CJ Green, Ann-Marie Mallon, John M Hancock…

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 978 KB

english, 2005

14

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

Anika Oellrich, Georgios V Gkoutos, Robert Hoehndorf…

Journal:

Journal of Biomedical Semantics

Année:

2012

Langue:

english

Fichier:

PDF, 223 KB

english, 2012

15

Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes

Georgios V Gkoutos, Robert Hoehndorf

Journal:

Journal of Biomedical Semantics

Année:

2012

Langue:

english

Fichier:

PDF, 197 KB

english, 2012

16

Analyzing gene expression data in mice with the Neuro Behavior Ontology

Hoehndorf, Robert, Hancock, John M., Hardy, Nigel W., Mallon, Ann-Marie, Schofield, Paul N., Gkoutos, Georgios V.

Journal:

Mammalian Genome

Année:

2014

Langue:

english

Fichier:

PDF, 268 KB

english, 2014

17

The mouse pathology ontology, MPATH; structure and applications

Schofield, Paul N, Sundberg, John P, Sundberg, Beth A, McKerlie, Colin, Gkoutos, Georgios V

Journal:

Journal of Biomedical Semantics

Année:

2013

Langue:

english

Fichier:

PDF, 370 KB

english, 2013

18

[World Scientific Publishing Co. Pte. Ltd. Biocomputing 2012 - The Pacific Symposium - Kohala Coast, Hawaii, USA (2012.01.03-2012.01.07)] Biocomputing 2012 - Proceedings of the Pacific Symposium - LINKING PHARMGKB TO PHENOTYPE STUDIES AND ANIMAL MODELS OF DISEASE FOR DRUG REPURPOSING

HOEHNDORF, ROBERT, OELLRICH, ANIKA, REBHOLZ-SCHUHMANN, DIETRICH, SCHOFIELD, PAUL N., GKOUTOS, GEORGIOS V.

Année:

2012

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2012

19

A robot-based resource discovery tool for adding chemical meta-information and value to web-based documents

Gkoutos, Georgios V., Kenway, Philip R., Rzepa, Henry S.

Journal:

New Journal of Chemistry

Année:

2001

Langue:

english

Fichier:

PDF, 271 KB

english, 2001

20

ChemDig: new approaches to chemically significant indexing and searching of distributed web collectionsElectronic supplementary information (ESI) available: list of less common chemical MIME media types, output template definitions and stylesheets associated with Table 4. See http://www.rsc.org/suppdata/nj/b1/b110693g/

Gkoutos, Georgios V., Leach, Christopher, Rzepa, Henry S.

Journal:

New Journal of Chemistry

Année:

2002

Langue:

english

Fichier:

PDF, 663 KB

english, 2002

21

Aber-OWL: a framework for ontology-based data access in biology

Hoehndorf, Robert, Slater, Luke, Schofield, Paul N, Gkoutos, Georgios V

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 799 KB

english, 2015

22

An ontology approach to comparative phenomics in plants

Oellrich, Anika, Walls, Ramona L, Cannon, Ethalinda, Cannon, Steven B, Cooper, Laurel, Gardiner, Jack, Gkoutos, Georgios V, Harper, Lisa, He, Mingze, Hoehndorf, Robert, Jaiswal, Pankaj, Kalberer, Scot

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2015

23

Similarity-based search of model organism, disease and drug effect phenotypes

Hoehndorf, Robert, Gruenberger, Michael, Gkoutos, Georgios V, Schofield, Paul N

Journal:

Journal of Biomedical Semantics

Année:

2015

Langue:

english

Fichier:

PDF, 336 KB

english, 2015

24

Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases

Hoehndorf, Robert, Schofield, Paul N., Gkoutos, Georgios V.

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2015

25

Best behaviour? Ontologies and the formal description of animal behaviour

Gkoutos, Georgios V., Hoehndorf, Robert, Tsaprouni, Loukia, Schofield, Paul N.

Journal:

Mammalian Genome

Année:

2015

Langue:

english

Fichier:

PDF, 395 KB

english, 2015

26

DermO; an ontology for the description of dermatologic disease

Fisher, Hannah M., Hoehndorf, Robert, Bazelato, Bruno S., Dadras, Soheil S., King, Lloyd E., Gkoutos, Georgios V., Sundberg, John P., Schofield, Paul N.

Journal:

Journal of Biomedical Semantics

Année:

2016

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2016

27

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert, Alshahrani, Mona, Gkoutos, Georgios V., Gosline, George, Groom, Quentin, Hamann, Thomas, Kattge, Jens, de Oliveira, Sylvia Mota, Schmidt, Marco, Sierra, Soraya, Smets, Erik, Vos, Ru

Journal:

Journal of Biomedical Semantics

Année:

2016

Langue:

english

Fichier:

PDF, 700 KB

english, 2016

28

The anatomy of phenotype ontologies: principles, properties and applications

Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, Robert

Journal:

Briefings in Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 477 KB

english, 2017

29

Using AberOWL for fast and scalable reasoning over BioPortal ontologies

Luke Slater,Georgios V. Gkoutos,Paul N. Schofield…

Journal:

Journal of Biomedical Semantics

Année:

2016

Langue:

english

Fichier:

PDF, 675 KB

english, 2016

30

Integrating phenotype ontologies with PhenomeNET

Rodríguez-García, Miguel Ángel, Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, Robert

Journal:

Journal of Biomedical Semantics

Année:

2017

Langue:

english

Fichier:

PDF, 721 KB

english, 2017

31

Semantic prioritization of novel causative genomic variants

Boudellioua, Imane, Mahamad Razali, Rozaimi B., Kulmanov, Maxat, Hashish, Yasmeen, Bajic, Vladimir B., Goncalves-Serra, Eva, Schoenmakers, Nadia, Gkoutos, Georgios V., Schofield, Paul N., Hoehndorf, R

Journal:

PLoS Computational Biology

Année:

2017

Langue:

english

Fichier:

PDF, 2.19 MB

english, 2017

32

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Hoehndorf, Robert, Dumontier, Michel, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, Schofield, Paul N., Gkoutos, Georgios V., Androulakis, Ioannis P.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 387 KB

english, 2011

33

Improving Disease Gene Prioritization by Comparing the Semantic Similarity of Phenotypes in Mice with Those of Human Diseases

Oellrich, Anika, Hoehndorf, Robert, Gkoutos, Georgios V., Rebholz-Schuhmann, Dietrich, Schuelke, Markus

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2012

34

Systematic Analysis of Experimental Phenotype Data Reveals Gene Functions

Hoehndorf, Robert, Hardy, Nigel W., Osumi-Sutherland, David, Tweedie, Susan, Schofield, Paul N., Gkoutos, Georgios V., Torkamani, Ali

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2013

35

Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)

Duque-Ramos, Astrid, Boeker, Martin, Jansen, Ludger, Schulz, Stefan, Iniesta, Miguela, Fernández-Breis, Jesualdo Tomás, Gkoutos, Georgios V.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1018 KB

english, 2014

36

A Geospatial Information Grid Framework for Geological Survey

Wu, Liang, Xue, Lei, Li, Chaoling, Lv, Xia, Chen, Zhanlong, Guo, Mingqiang, Xie, Zhong, Gkoutos, Georgios V.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.74 MB

english, 2015

37

Minimally inconsistent reasoning in Semantic Web

Zhang, Xiaowang, Gkoutos, Georgios V.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.61 MB

english, 2017

38

Ontology-based validation and identification of regulatory phenotypes

Kulmanov, Maxat, Schofield, Paul N, Gkoutos, Georgios V, Hoehndorf, Robert

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 657 KB

english, 2018

39

A Review of Current Standards and the Evolution of Histopathology Nomenclature for Laboratory Animals

Elmore, Susan A, Cardiff, Robert, Cesta, Mark F, Gkoutos, Georgios V, Hoehndorf, Robert, Keenan, Charlotte M, McKerlie, Colin, Schofield, Paul N, Sundberg, John P, Ward, Jerrold M

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2018

40

OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

Boudellioua, Imane, Kulmanov, Maxat, Schofield, Paul N., Gkoutos, Georgios V., Hoehndorf, Robert

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2018

41

Annotating and detecting phenotypic information for chronic obstructive pulmonary disease

Ju, Meizhi, Short, Andrea D, Thompson, Paul, Bakerly, Nawar Diar, Gkoutos, Georgios V, Tsaprouni, Loukia, Ananiadou, Sophia

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 534 KB

english, 2019

42

Uberon: towards a comprehensive multi-species anatomy ontology

Haendel, Melissa, Gkoutos, Georgios, Lewis, Suzanna, Mungall, Chris

Journal:

Bioentrepreneur

Année:

2009

Langue:

english

Fichier:

PDF, 12 KB

english, 2009

43

Development and validation of multivariable prediction models of remission, recovery, and quality of life outcomes in people with first episode psychosis: a machine learning approach

Leighton, Samuel P, Upthegrove, Rachel, Krishnadas, Rajeev, Benros, Michael E, Broome, Matthew R, Gkoutos, Georgios V, Liddle, Peter F, Singh, Swaran P, Everard, Linda, Jones, Peter B, Fowler, David,

Journal:

The Lancet Digital Health

Année:

2019

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2019

44

899 A MULTICENTRE VALIDATION STUDY OF A NOVEL LOWER GASTROINTESTINAL BLEEDING (LGIB) SCORE-THE BIRMINGHAM (BHAM) SCORE

Smith, Samuel C., Bazarova, Alina, Ejenavi, Efe, Qurashi, Maria, Shivaji, Uday N., Harvey, Philip R., Slaney, Emma, McFarlane, Michael, Baker, Graham, Elnagar, Mohamed, Yuzari, Sarah, Gkoutos, Georgio

Journal:

Gastrointestinal Endoscopy

Année:

2019

Langue:

english

Fichier:

PDF, 343 KB

english, 2019

45

Sa1723 – Mucosal Healing Defined by Advanced Electronic Chromoendoscopy Picasso (Paddington International Virtual Chromoendoscopy Score) and Probe Confocal Laser Endomicroscopy Accurately Predict Histological Healing of Active Inflammation But Not Chronic Changes

Iacucci, Marietta, Cannatelli, Rosanna, Gui, Sean X., Lethebe, Brendan C., Bazarova, Alina, Gkoutos, Georgios, Kaplan, Gilaad, Panaccione, Remo, Kiesslich, Ralf, Ghosh, Subrata

Journal:

Gastroenterology

Année:

2019

Langue:

english

Fichier:

PDF, 264 KB

english, 2019

46

Uberon: towards a comprehensive multi-species anatomy ontology

Haendel, Melissa, Gkoutos, Georgios, Lewis, Suzanna, Mungall, Chris

Journal:

Bioentrepreneur

Année:

2009

Fichier:

PDF, 12 KB

2009

47

Sa1723 – Mucosal Healing Defined by Advanced Electronic Chromoendoscopy Picasso (Paddington International Virtual Chromoendoscopy Score) and Probe Confocal Laser Endomicroscopy Accurately Predict Histological Healing of Active Inflammation But Not Chronic Changes

Iacucci, Marietta, Cannatelli, Rosanna, Gui, Sean X., Lethebe, Brendan C., Bazarova, Alina, Gkoutos, Georgios, Kaplan, Gilaad, Panaccione, Remo, Kiesslich, Ralf, Ghosh, Subrata

Journal:

Gastroenterology

Année:

2019

Fichier:

PDF, 264 KB

2019

48

Sa1730 – The Histological Healing in Ulcerative Colitis Patients Can Be Predicted by the Combination of Fecal Calprotectin and Endoscopic Healing Assessed by Advanced Optical Enhancement Techniques

Cannatelli, Rosanna, Shivaji, Uday N., Smith, Samuel C., Zardo, Davide, Bazarova, Alina, Gkoutos, Georgios, Ghosh, Subrata, Iacucci, Marietta

Journal:

Gastroenterology

Année:

2019

Langue:

english

Fichier:

PDF, 315 KB

english, 2019

49

A Practical Guide to Assess the Reproducibility of Echocardiographic Measurements

Bunting, Karina V., Steeds, Richard P., Slater, Luke T., Rogers, Jennifer K., Gkoutos, Georgios V., Kotecha, Dipak

Journal:

Journal of the American Society of Echocardiography

Année:

2019

Langue:

english

Fichier:

PDF, 466 KB

english, 2019

50

Ontology-based prediction of cancer driver genes

Althubaiti, Sara, Karwath, Andreas, Dallol, Ashraf, Noor, Adeeb, Alkhayyat, Shadi Salem, Alwassia, Rolina, Mineta, Katsuhiko, Gojobori, Takashi, Beggs, Andrew D., Schofield, Paul N., Gkoutos, Georgios

Journal:

Scientific Reports

Année:

2019

Fichier:

PDF, 1.60 MB

2019